Evolutionary Quantitative Genetics Workshop

Evolutionary Quantitative Genetics Workshop

       
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FHL waterfront in 2018
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Exercise 2-1: Using MCMCglmm in R to estimate inheritance parameters

Patrick Carter

Before our session on Tuesday please make sure you have installed the following R packages: ggplot2, MasterBayes, MCMCglmm, Plyr

Before Class Tuesday please download the following 4 files. Note that Model 101 output and Model 1201 output can only be read and visualized from within the R environment using a load command. I’ll show you how to open these on Tuesday.

R MCMCglmm script

ASCCI data set to use with above R script

Model 101 output Phenotype 1 Additive and Fixed nitt =1,000,000

Model 1201 output Phenotypes 1 and 2 Additive and Fixed nitt = 2,000,000